MRIQC: individual T1w report

Summary

Subject ID: 041_ControlPre.
Date and time: 2018-05-06, 22:57.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.27606946418315287
cnr			4.663999136836314
efc			0.5802253794647285
fber			113.65739440917969
fwhm	avg		3.7633233333333336
fwhm	x		3.6423
fwhm	y		3.98397
fwhm	z		3.6637
icvs	csf		0.19455144224732518
icvs	gm		0.4603504332759584
icvs	wm		0.3450981244767164
inu	med		1.0386607646942139
inu	range		0.2980733305215836
qi	1		0.0
qi	2		0.0010277253622586625
rpve	csf		24.479785924269454
rpve	gm		11.719413066803673
rpve	wm		18.18550748034063
size	x		180
size	y		256
size	z		256
snr	csf		2.476489954129722
snr	gm		10.804773151663463
snr	total		11.152864065699662
snr	wm		20.177329091305804
snrd	csf		15.434389449419513
snrd	gm		33.484243937133265
snrd	total		33.85474579237009
snrd	wm		52.64560399055749
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.8596514927017229
summary	bg	mad	12.444398880004883
summary	bg	mean	49.54563903808594
summary	bg	median	48.75248718261719
summary	bg	n	2913366.0
summary	bg	p05	30.3320255279541
summary	bg	p95	71.85658836364746
summary	bg	stdv	12.984062194824219
summary	csf	k	1.040333455808934
summary	csf	mad	129.02532958984375
summary	csf	mean	310.3245849609375
summary	csf	median	293.1781921386719
summary	csf	n	13707.0
summary	csf	p05	148.24933624267578
summary	csf	p95	505.8330841064452
summary	csf	stdv	118.3802490234375
summary	gm	k	0.05526813628126748
summary	gm	mad	58.10074234008789
summary	gm	mean	634.9304809570312
summary	gm	median	636.0374755859375
summary	gm	n	44228.0
summary	gm	p05	535.663296508789
summary	gm	p95	729.9020599365235
summary	gm	stdv	58.86567687988281
summary	wm	k	1.201865696164493
summary	wm	mad	42.380943298339844
summary	wm	mean	994.8915405273438
summary	wm	median	1000.0099487304688
summary	wm	n	189863.0
summary	wm	p05	900.5727172851563
summary	wm	p95	1065.7695190429688
summary	wm	stdv	49.560935974121094
tpm	overlap	csf	0.22000840306282043
tpm	overlap	gm	0.5380809903144836
tpm	overlap	wm	0.5536504983901978
wm2max			0.6630110555306884

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	77e81048ba6c33110262ec2a781b896f
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.