MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.27606946418315287
cnr4.663999136836314
efc0.5802253794647285
fber113.65739440917969
fwhmavg3.7633233333333336
fwhmx3.6423
fwhmy3.98397
fwhmz3.6637
icvscsf0.19455144224732518
icvsgm0.4603504332759584
icvswm0.3450981244767164
inumed1.0386607646942139
inurange0.2980733305215836
qi10.0
qi20.0010277253622586625
rpvecsf24.479785924269454
rpvegm11.719413066803673
rpvewm18.18550748034063
sizex180
sizey256
sizez256
snrcsf2.476489954129722
snrgm10.804773151663463
snrtotal11.152864065699662
snrwm20.177329091305804
snrdcsf15.434389449419513
snrdgm33.484243937133265
snrdtotal33.85474579237009
snrdwm52.64560399055749
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.8596514927017229
summarybgmad12.444398880004883
summarybgmean49.54563903808594
summarybgmedian48.75248718261719
summarybgn2913366.0
summarybgp0530.3320255279541
summarybgp9571.85658836364746
summarybgstdv12.984062194824219
summarycsfk1.040333455808934
summarycsfmad129.02532958984375
summarycsfmean310.3245849609375
summarycsfmedian293.1781921386719
summarycsfn13707.0
summarycsfp05148.24933624267578
summarycsfp95505.8330841064452
summarycsfstdv118.3802490234375
summarygmk0.05526813628126748
summarygmmad58.10074234008789
summarygmmean634.9304809570312
summarygmmedian636.0374755859375
summarygmn44228.0
summarygmp05535.663296508789
summarygmp95729.9020599365235
summarygmstdv58.86567687988281
summarywmk1.201865696164493
summarywmmad42.380943298339844
summarywmmean994.8915405273438
summarywmmedian1000.0099487304688
summarywmn189863.0
summarywmp05900.5727172851563
summarywmp951065.7695190429688
summarywmstdv49.560935974121094
tpmoverlapcsf0.22000840306282043
tpmoverlapgm0.5380809903144836
tpmoverlapwm0.5536504983901978
wm2max0.6630110555306884

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum77e81048ba6c33110262ec2a781b896f
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.